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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Gata1
wikigenes
PDBj
CellType: G1E
ATCC
MeSH
RIKEN BRC
SRX100316
GSM722390: Gata1 G1ERbmp r1 100914 4
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Gata1
Cell type
Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor
Attributes by original data submitter
Sample
source_name
Gata1 ChIP-Seq in mouse G1ER treated with BIO
cell type
Erthyroid Progenitor (G1ER)
chip antibody
Gata1
antibody catalog number
Santa Cruz SC-265
Sequenced DNA Library
library_name
GSM722390: Gata1_G1ERbmp_r1_100914_4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
24988334
Reads aligned (%)
87.6
Duplicates removed (%)
5.3
Number of peaks
7486 (qval < 1E-05)
mm9
Number of total reads
24988334
Reads aligned (%)
87.5
Duplicates removed (%)
5.4
Number of peaks
7379 (qval < 1E-05)
Base call quality data from
DBCLS SRA